Genomes


Last updated: 2021 Jul 12
Total hit(s): 30
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Whole Genome sequencing of the WH-Human 1 corona virus (WHCV) was reported The order of genes (5 to 3) was as follows: replicase ORF1ab, spike (S), envelope (E), membrane (M) and nucle- ocapsid (N). WHCV has 5 and 3 terminal sequences that are typical of betacoronaviruses, with 265 nt at the 5 terminal end and 229 nt at the 3 terminal end. The predicted replicase ORF1ab gene of WHCV is 21,291 nt in length and contained 16 predicted non-structural proteins. highly conserved domain (LLRKNGNKG: amino acids 122130) in nsp1 with SARS-CoV. The predicted S, ORF3a, E, M and N genes of WHCV are 3,822, 828, 228, 669 and 1,260 nt in length, respectively.
32015508
(Nature)
PMID
32015508
Date of Publishing: 2020 Mar
Title A new coronavirus associated with human respiratory disease in China
Author(s) nameWu F, Zhao S et al.
Journal Nature
Impact factor
24.36
Citation count: 1592
Date of Entry 2021 Jul 12


Whole Genome Sequences of 54 SARS-CoV-2 Strains (from August to October 2020), reported from Kolkata, West Bengal. The age of the patients ranges from 6 to 88 years with a maximum peak in the range of 51-60 years.
The majority of sequences clustered into O clade or Nextstrain 20A clade.
The clade-specific mutations and the co-mutation patterns across states and union territories of India over the time course were studied.
Pre-print (bioRXiv)
Date of Publishing -
Title Genomic surveillance and phylodynamic analyses reveal emergence of novel mutation and co-mutation patterns within SARS-CoV2 variants prevalent in India
Author(s) name -
Date of Entry 2021 Jun 14


Whole Genome Sequence of a SARS-CoV-2 Isolate UF-8 (with an in-frame 12-nucleotide deletion within ORF3a), reported from Florida. Patient's age and Gender: 78-year-old woman
RNA sample was tested positive for SARS-CoV-2 using the CDC real-time reverse transcriptase PCR.
NP specimen inoculated onto Vero E6 cells and incubated to obtain high amount of vRNA sequencing samples.
Phylogenetic analysis and mutations were also reported
33632859
(Microbiol Resour Announc)
PMID
33632859
Date of Publishing: 2021 Feb 25
Title In-Frame 12-Nucleotide Deletion within Open Reading Frame 3a in a SARS-CoV-2 Strain Isolated from a Patient Hospitalized with COVID-19
Author(s) nameLednicky JA, Cherabuddi K et al.
Journal Microbiol Resour Announc
Impact factor
0.88
Citation count: 1


Whole Genome sequences of ten SARS-CoV-2 isolates, reported from Sliema, Malta. Phylogenetic analysis and mutations were also reported for the sequenced genomes.
33509993
(Microbiol Resour Announc)
PMID
33509993
Date of Publishing: 2021 Jan 28
Title Genome Sequences of 10 SARS-CoV-2 Viral Strains Obtained by Nanopore Sequencing of Nasopharyngeal Swabs in Malta
Author(s) nameBiazzo M, Madeddu S et al.
Journal Microbiol Resour Announc
Impact factor
0.88
Citation count: 1


Whole Genome Sequences of two SARS-CoV-2 isolates, reported from the United States (Arkansas). Phylogenetic analysis and mutations were also reported for the sequenced genomes.
33334896
(Microbiol Resour Announc)
PMID
33334896
Date of Publishing: 2020 Dec 17
Title Two SARS-CoV-2 Genome Sequences of Isolates from Rural U.S. Patients Harboring the D614G Mutation, Obtained Using Nanopore Sequencing
Author(s) nameJenjaroenpun P, Wanchai V et al.
Journal Microbiol Resour Announc
Impact factor
0.88
Citation count: 1


Whole Genome Sequences of twenty SARS-CoV-2 Isolates, reported from Taiwan. Phylogenetic analysis and mutations were also reported for the sequenced genomes
32543353
(Emerg Microbes Infect)
PMID
32543353
Date of Publishing: 2020 Dec
Title SARS-CoV-2 genomic surveillance in Taiwan revealed novel ORF8-deletion mutant and clade possibly associated with infections in Middle East
Author(s) nameGong YN, Tsao KC et al.
Journal Emerg Microbes Infect
Impact factor
5.84
Citation count: 22


Whole Genome Sequences of two SARS-CoV-2 isolates, reported from Tunis. Phylogenetic analysis and mutations were also reported for the sequenced genomes.
33034798
(Virus Genes)
PMID
33034798
Date of Publishing: 2020 Dec
Title Whole genome sequencing and phylogenetic classification of Tunisian SARS-CoV-2 strains from patients of the Military Hospital in Tunis
Author(s) nameHandrick S, Bestehorn-Willmann M et al.
Journal Virus Genes
Citation count 2


Whole Genome Sequences of two hundred twelve SARS-CoV-2 Isolates, reported from Israel. Phylogenetic analysis and mutations were also reported for the sequenced genomes.
33139704
(Nat Commun)
PMID
33139704
Date of Publishing: 2020 Nov 2
Title Full genome viral sequences inform patterns of SARS-CoV-2 spread into and within Israel
Author(s) nameMiller D, Martin MA et al.
Journal Nat Commun
Impact factor
11.8
Citation count: 9


Whole Genome Sequences of twenty-three SARS-CoV-2 isolates, reported from the Philippines. Phylogenetic analysis and mutations were also reported for the sequenced genome.
33093050
(Microbiol Resour Announc)
PMID
33093050
Date of Publishing: 2020 Oct 22
Title Coding-Complete Genome Sequences of 23 SARS-CoV-2 Samples from the Philippines
Author(s) nameVelasco JM, Chinnawirotpisan P et al.
Journal Microbiol Resour Announc
Impact factor
0.88
Citation count: 2


Whole Genome sequences of twenty-nine SARS-CoV-2 isolates, reported from Hangzhou, China. Phylogenetic analysis and mutations were also reported for the sequenced genome.
33060796
(Sci Rep)
PMID
33060796
Date of Publishing: 2020 Oct 15
Title Rapid genomic characterization of SARSCoV2 viruses from clinical specimens using nanopore sequencing
Author(s) nameLi J, Wang H et al.
Journal Sci Rep
Impact factor
4.12
Citation count: 1


Whole Genome Sequences of three SARS-COV-2 isolates, reported from Bangladesh. Phylogenetic analysis and mutations were also reported for the sequenced genome.
32972934
(Microbiol Resour Announc)
PMID
32972934
Date of Publishing: 2020 Sep 24
Title Coding-Complete Genome Sequences of Three SARS-CoV-2 Strains from Bangladesh
Author(s) nameAkter S, Banu TA et al.
Journal Microbiol Resour Announc
Impact factor
0.88
Citation count: 1


Whole Genome Sequence of a SARS-CoV-2 Isolate, reported from Siena. 39 pairs of primers were designed for sequencing SARS-CoV-2 viral whole genome (Link: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7516159/table/tab1/). Phylogenetic analysis were reported for the sequenced genome.
32972948
(Microbiol Resour Announc)
PMID
32972948
Date of Publishing: 2020 Sep 24
Title Whole-Genome Sequence of SARS-CoV-2 Isolate Siena-1/2020
Author(s) nameCusi MG, Pinzauti D et al.
Journal Microbiol Resour Announc
Impact factor
0.88
Citation count: 1


Whole Genome Sequences of SARS-CoV-2 Isolates, reported from Brescia, Italy. SARS-CoV-2 were isolated from 2 high viral load specimens identified on March 9 (AP66) and on May 8 (GZ69) was performed on Vero E6 cells. And sequencing were carried out for three samples (cell culture supernatent of AP66, GZ69, and ex vivo GZ69 nasopharyngeal sample.
32967693
(J Transl Med)
PMID
32967693
Date of Publishing: 2020 Sep 23
Title A persistently replicating SARS-CoV-2 variant derived from an asymptomatic individual
Author(s) nameCaccuri F, Zani A et al.
Journal J Transl Med
Impact factor
4.2
Citation count: 4


Whole Genome Sequence of a SARS-CoV-2 Isolate, reported from Mexico. The sample is collected from a 35 year-old male patient. Phylogenetic analysis and mutations were also reported for the sequenced genome.
32556599
(Arch Virol)
PMID
32556599
Date of Publishing: 2020 Sep
Title Full genome sequence of the first SARS-CoV-2 detected in Mexico
Author(s) nameGarcés-Ayala F, Araiza-Rodríguez A et al.
Journal Arch Virol
Impact factor
2.23
Citation count: 4


Whole Genome Sequences of six SARS-CoV-2 Isolates, reported from Morocco. Phylogenetic analysis and mutations were also reported for the sequenced genome.
32763945
(Microbiol Resour Announc)
PMID
32763945
Date of Publishing: 2020 Aug 6
Title Genome Sequences of Six SARS-CoV-2 Strains Isolated in Morocco, Obtained Using Oxford Nanopore MinION Technology
Author(s) nameLaamarti M, Chemao-Elfihri MW et al.
Journal Microbiol Resour Announc
Impact factor
0.88
Citation count: 1


Whole Genome Sequence of a SARS-CoV-2 Isolate, reported from Bangladesh. 48 pairs of primers were designed for sequencing SARS-CoV-2 viral whole genome (Link: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7348026/table/tab1/) Phylogenetic analysis were performed for the sequenced genome.
32646908
(Microbiol Resour Announc)
PMID
32646908
Date of Publishing: 2020 Jul 9
Title Coding-Complete Genome Sequence of SARS-CoV-2 Isolate from Bangladesh by Sanger Sequencing
Author(s) nameMoniruzzaman M, Hossain MU et al.
Journal Microbiol Resour Announc
Impact factor
0.88
Citation count: 2


Whole Genome Sequences of two SARS-CoV-2 isolates, reported from Israel. Phylogenetic analysis and mutations were also reported for the sequenced genome.
32646911
(Microbiol Resour Announc)
PMID
32646911
Date of Publishing: 2020 Jul 9
Title Coding-Complete Genome Sequences of Two SARS-CoV-2 Isolates from Early Manifestations of COVID-19 in Israel
Author(s) nameCohen-Gihon I, Israeli O et al.
Journal Microbiol Resour Announc
Impact factor
0.88
Citation count: 1


Whole Genome Sequences of three SARS-CoV-2 Isolates, reported from Hong Kong. The age of patients (ID: HKSH0003, HKSH0004, HKSH0007) are 58, 61, 59 respectively. Phylogenetic analysis were performed for the sequenced genome.
32732237
(Microbiol Resour Announc)
PMID
32732237
Date of Publishing: 2020 Jul 30
Title Genome Sequences of SARS-CoV-2 Strains Detected in Hong Kong
Author(s) nameAu CH, Chan WS et al.
Journal Microbiol Resour Announc
Impact factor
0.88
Citation count: 1


Whole Genome Sequences of five SARS-CoV-2 Isolates, reported from Bangladesh.
32732236
(Microbiol Resour Announc)
PMID
32732236
Date of Publishing: 2020 Jul 30
Title Reports of Coding-Complete Genome Sequences of Five 2019 Novel Coronavirus (SARS-CoV-2) Strains Isolated in Bangladesh
Author(s) nameKhan MI, Hasan KN et al.
Journal Microbiol Resour Announc
Impact factor
0.88
Citation count: 1


Whole Genome Sequence of a SARS-CoV-2 Isolate, reported from Morocco. Phylogenetic analysis and mutations were also reported for the sequenced genome.
32616647
(Microbiol Resour Announc)
PMID
32616647
Date of Publishing: 2020 Jul 2
Title Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Causing a COVID-19 Case in Morocco
Author(s) nameLemriss S, Souiri A et al.
Journal Microbiol Resour Announc
Impact factor
0.88
Citation count: 1


Whole Genome Sequence of a SARS-CoV-2 Isolates, reported from Hamburg, northern Germany. The sample is collected from a 62 year old patient. Nucleotide variants are also reported for the sequenced genome.
32499358
(Microbiol Resour Announc)
PMID
32499358
Date of Publishing: 2020 Jun 4
Title Complete Genome Sequence of a SARS-CoV-2 Strain Isolated in Northern Germany
Author(s) namePfefferle S, Huang J et al.
Journal Microbiol Resour Announc
Impact factor
0.88
Citation count: 5


Whole Genome Sequence of a SARS-CoV-2 Isolate reported from Colombia. The sample is collected from a 45 year old patient. Phylogenetic analysis and mutations were also reported for the sequenced genome.
32586872
(Microbiol Resour Announc)
PMID
32586872
Date of Publishing: 2020 Jun 25
Title Genome Sequence of SARS-CoV-2 Isolate Cali-01, from Colombia, Obtained Using Oxford Nanopore MinION Sequencing
Author(s) name Lopez-Alvarez D, Parra B, Cuellar WJ.
Journal Microbiol Resour Announc
Impact factor
0.88
Citation count: 3


Whole Genome Sequences of four SARS-CoV-2 Isolates, reported from Ecuador. Age of all the four patients (ID: HEE-01, HGSQ-USFQ-018, HGSQ-USFQ-007, HGSQ-USFQ-010) are 50, 27, 40, 39 respectively Phylogenetic analysis and mutations were also reported for the sequenced genome. Metagenomic Sequencing and analysis was performed for one (ID: HEE-01)
32588004
(medRxiv)
PMID
32588004
Date of Publishing: 2020 Jun 14
Title Genome sequencing of the first SARS-CoV-2 reported from patients with COVID-19 in Ecuador
Author(s) nameMarquez S, Prado-Vivar B et al.
Journal medRxiv
Impact factor
Cant find
Citation count: 1


Whole Genome Sequence of a SARS-CoV-2 Isolate, reported from Bangladesh. Phylogenetic analysis and mutations were also reported for the sequenced genome.
32527780
(Microbiol Resour Announc)
PMID
32527780
Date of Publishing: 2020 Jun 11
Title Complete Genome Sequence of a Novel Coronavirus (SARS-CoV-2) Isolate from Bangladesh
Author(s) nameSaha S, Malaker R et al.
Journal Microbiol Resour Announc
Impact factor
0.88
Citation count: 4


Whole Genome Sequence of a SARS-CoV-2 Isolate, reported from Peru. The sample is collected from 61 year old patient. Phylogenetic analysis were performed for the sequenced genome.
32381617
(Microbiol Resour Announc)
PMID
32381617
Date of Publishing: 2020 May 7
Title Near-Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Causing a COVID-19 Case in Peru
Author(s) namePadilla-Rojas C, Lope-Pari P et al.
Journal Microbiol Resour Announc
Impact factor
0.88
Citation count: 4