Partial Proteins

Protein Name
Gene Name
PDB ID
Title
Structure Title
Method
Resolution (Å)
PubMed ID
Structure
Nucleoprotein
N
6YUN
High-resolution structure and biophysical characterization of the nucleocapsid phosphoprotein dimerization domain from the Covid-19 severe acute respiratory syndrome coronavirus 2.
1.45 Angstrom Resolution Crystal Structure of C-terminal Dimerization Domain of Nucleocapsid Phosphoprotein from SARS-CoV-2
X-ray diffraction
1.44
33039147
3D view
Frameshift Stimulation Element from the SARS-CoV-2 RNA Genome
(gene name not mentioned)
6XRZ
Cryo-electron Microscopy and Exploratory Antisense Targeting of the 28-kDa Frameshift Stimulation Element from the SARS-CoV-2 RNA Genome.
The 28-kDa Frameshift Stimulation Element from the SARS-CoV-2 RNA genome
Electron microscopy
6.9
32743589
3D view
Nucleocapsid protein
N
6M3M
Crystal structure of SARS-CoV-2 nucleocapsid protein RNA binding domain reveals potential unique drug targeting sites.
Crystal structure of SARS-CoV-2 nucleocapsid protein N-terminal RNA binding domain
X-ray diffraction
2.70
32363136
3D view
Spike protein S2
S, 2
6LVN
Crystal structure of HR2 domain of 2019-nCoV S2 subunit
Structure of the 2019-nCoV HR2 Domain
X-ray diffraction
2.47
To be published
3D view
Spike protein S2, Spike protein S2
S, 2
6LXT
Inhibition of SARS-CoV-2 (previously 2019-nCoV) infection by a highly potent pan-coronavirus fusion inhibitor targeting its spike protein that harbors a high capacity to mediate membrane fusion.
Structure of post fusion core of 2019-nCoV S2 subunit
X-ray diffraction
2.90
32231345
3D view
Spike protein S1, S2
S, 2
7CN9
A Carbohydrate-Binding Protein from the Edible Lablab Beans Effectively Blocks the Infections of Influenza Viruses and SARS-CoV-2.
Cryo-EM structure of SARS-CoV-2 Spike ectodomain
Electron microscopy
4.70
32755598
3D view
NSP 3
rep, 1a-1b
7KAG
Crystal structure of the ubiquitin-like domain 1 (Ubl1) of Nsp3 from SARS-CoV-2
Crystal structure of the ubiquitin-like domain 1 (Ubl1) of Nsp3 from SARS-CoV-2
X-ray diffraction
3.21
To be published
3D view
Spike glycoprotein
S, 2
6VSB
Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation.
Prefusion 2019-nCoV spike glycoprotein with a single receptor-binding domain up
Electron microscopy
3.46
32075877
3D view
NSP3
rep, 1a-1b
7KR1
Crystal structure of SARS-CoV-2 NSP3 macrodomain (C2 crystal form, 310 K)
Crystal structure of SARS-CoV-2 NSP3 macrodomain (C2 crystal form, 310 K)
X-ray diffraction
1.55
To be published
3D view
NSP3
rep, 1a-1b
7KQW
Crystal structure of SARS-CoV-2 NSP3 macrodomain (C2 crystal form, methylated)
Crystal structure of SARS-CoV-2 NSP3 macrodomain (C2 crystal form, methylated)
X-ray diffraction
0.93
To be published
3D view
NSP 3
rep, 1a-1b
7KQO
Crystal structure of SARS-CoV-2 NSP3 macrodomain (P43 crystal form)
Crystal structure of SARS-CoV-2 NSP3 macrodomain (P43 crystal form)
X-ray diffraction
0.85
To be published
3D view
Main protease
rep, 1a-1b
7KFJ
SARS-CoV-2 Main protease immature form - fragment BBV-136614527
SARS-CoV-2 Main protease immature form - fragment BBV-136614527
X-ray diffraction
2.66
To be published
3D view
Nucleoprotein
N
6WZO
Architecture and self-assembly of the SARS-CoV-2 nucleocapsid protein.
Structure of SARS-CoV-2 Nucleocapsid dimerization domain, P1 form
X-ray diffraction
1.42
32511359
3D view
Nucleoprotein
N
6WZQ
Architecture and self-assembly of the SARS-CoV-2 nucleocapsid protein.
Structure of SARS-CoV-2 Nucleocapsid dimerization domain, P21 form
X-ray diffraction
1.45
32511359
3D view
Spike glycoprotein
S, 2
6X79
Structure-guided covalent stabilization of coronavirus spike glycoprotein trimers in the closed conformation.
Prefusion SARS-CoV-2 S ectodomain trimer covalently stabilized in the closed conformation
Electron microscopy
2.90
32753755
3D view
Nucleoprotein
N
6ZCO
High-resolution structure and biophysical characterization of the nucleocapsid phosphoprotein dimerization domain from the Covid-19 severe acute respiratory syndrome coronavirus 2.
Crystal Structure of C-terminal Dimerization Domain of Nucleocapsid Phosphoprotein from SARS-CoV-2, crystal form II
X-RAY DIFFRACTION
1.36
33039147
3D view
Nucleoprotein
N
6YI3
The N-terminal RNA-binding domain of the SARS-CoV-2 nucleocapsid phosphoprotein
The N-terminal RNA-binding domain of the SARS-CoV-2 nucleocapsid phosphoprotein
Solution NMR
~
To be published
3D view
Nucleoprotein
N
7CE0
Structures of the SARS-CoV-2 nucleocapsid and their perspectives for drug design.
Crystal structure of 2019-nCoV nucleocapsid C-terminal domain (CTD) protein
X-RAY DIFFRACTION
1.50
32914439
3D view
Nucleoprotein
N
7CDZ
Structures of the SARS-CoV-2 nucleocapsid and their perspectives for drug design.
Crystal structure of 2019-nCoV nucleocapsid N-terminal domain (NTD) protein
X-RAY DIFFRACTION
1.80
32914439
3D view
Nucleoprotein
N
7C22
Structural characterization of the C-terminal domain of SARS-CoV-2 nucleocapsid protein
Crystal structure of the C-terminal domain of SARS-CoV-2 nucleocapsid protein
X-RAY DIFFRACTION
2.00
PMC7406681
3D view
Envelope small membrane protein
E, 4
7K3G
Structure and drug binding of the SARS-CoV-2 envelope protein transmembrane domain in lipid bilayers.
SARS-CoV-2 Envelope Protein Transmembrane Domain: Pentameric Structure Determined by Solid-State NMR
Solid state NMR
~
33177698
3D view
NSP 3
rep, 1a-1b
7KG3
Targeting SARS-CoV-2 Nsp3 macrodomain structure with insights from human poly(ADP-ribose) glycohydrolase (PARG) structures with inhibitors
Crystal structure of CoV-2 Nsp3 Macrodomain
X-RAY DIFFRACTION
1.45
To be published
3D view
Nucleoprotein
N
6VYO
Crystal structure of RNA binding domain of nucleocapsid phosphoprotein from SARS coronavirus 2
Crystal structure of RNA binding domain of nucleocapsid phosphoprotein from SARS coronavirus 2
X-ray diffraction
1.7
To be published
3D view
Spike glycoprotein
S,2
6VYB
Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein.
SARS-CoV-2 spike ectodomain structure (open state)
Electron microscopy
3.2
32155444
3D view
Spike glycoprotein
S,2
6VXX
Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein.
Structure of the SARS-CoV-2 spike glycoprotein (closed state)
Electron microscopy
2.8
32155444
3D view
Nsp3
rep, 1a-1b
6WEY
Molecular Basis for ADP-Ribose Binding to the Mac1 Domain of SARS-CoV-2 nsp3.
High-resolution structure of the SARS-CoV-2 NSP3 Macro X domain
X-ray diffraction
0.95
32578982
3D view
Nucleocapsid protein
N
6WJI
2.05 Angstrom Resolution Crystal Structure of C-terminal Dimerization Domain of Nucleocapsid Phosphoprotein from SARS-CoV-2
2.05 Angstrom Resolution Crystal Structure of C-terminal Dimerization Domain of Nucleocapsid Phosphoprotein from SARS-CoV-2
X-ray diffraction
2.052
To be published
3D view
Nucleocapsid protein
N
6WKP
Crystal structure of RNA-binding domain of nucleocapsid phosphoprotein from SARS CoV-2, monoclinic crystal form
Crystal structure of RNA-binding domain of nucleocapsid phosphoprotein from SARS CoV-2, monoclinic crystal form
X-ray diffraction
2.67
To be published
3D view
3C-like proteinase
rep, 1a-1b
6WQF
Structural plasticity of SARS-CoV-2 3CL Mproactive site cavity revealed by room temperature X-ray crystallography.
Structural Plasticity of the SARS-CoV-2 3CL Mpro Active Site Cavity Revealed by Room Temperature X-ray Crystallography
X-ray diffraction
2.3
32581217
3D view
Nucleoprotein
N
6WZQ
Architecture and self-assembly of the SARS-CoV-2 nucleocapsid protein.
Structure of SARS-CoV-2 Nucleocapsid dimerization domain, P21 form
X-ray diffraction
1.45
32511359
3D view
Nucleoprotein
N
6WZO
Architecture and self-assembly of the SARS-CoV-2 nucleocapsid protein.
Structure of SARS-CoV-2 Nucleocapsid dimerization domain, P1 form
X-ray diffraction
1.42
32511359
3D view