Metagenomics


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Key Findings
Metagenomics analysis of three samples from Taiwan revealed the co-existence of Haemophilus parainfluenzae.
PMID 32543353
Title SARS-CoV-2 genomic surveillance in Taiwan revealed novel ORF8-deletion mutant and clade possibly associated with infections in Middle East
Author(s) nameGong YN, Tsao KC, Hsiao MJ, Huang CG, Huang PN, Huang PW, Lee KM, Liu YC, Yang SL, Kuo RL, Chen KF, Liu YC, Huang SY, Huang HI, Liu MT, Yang JR, Chiu CH, Yang CT, Chen GW, Shih SR.
Journal Emerg Microbes Infect
Impact factor5.84
Citation count22
Date of publishing2020 Dec
Metagenomics sequencing revealed bacterial and viral co-infections and the respiratory microbial diversity associated with SARS-CoV-2, cause of disease severity.
PMID 33219095
Title Metagenomic Next-Generation Sequencing of Nasopharyngeal Specimens Collected from Confirmed and Suspect COVID-19 Patients
Author(s) nameMostafa HH, Fissel JA, Fanelli B, Bergman Y, Gniazdowski V, Dadlani M, Carroll KC, Colwell RR, Simner PJ.
Journal mBio
Impact factor6.5
Citation count2
Date of publishing2020 Nov 20
Metagenomics analysis of the first SARS-CoV-2 patient from Ecuador revealed the presence of pathogenic bacterial coinfection. It was most likely involved in worsening the patient's health condition.
PMID 32588004
Title Genome sequencing of the first SARS-CoV-2 reported from patients with COVID-19 in Ecuador
Author(s) nameMarquez S, Prado-Vivar B, Guadalupe JJ, Gutierrez Granja B, Jibaja M, Tobar M, Mora F, Gaviria J, Garcia M, Ligna E, Espinosa F, Reyes J, Barragan V, Rojas-Silva P, Trueba G, Grunauer M, Cardenas P.
Journal medRxiv
Impact factorCant find
Citation count1
Date of publishing2020 Jun 14
Metagenomic Analysis of a Sample (WIV04) from Wuhan, China, revealed a new coronavirus (2019-nCoV). It caused an epidemic of acute respiratory syndrome in humans.
PMID 32015507
Title A pneumonia outbreak associated with a new coronavirus of probable bat origin
Author(s) nameZhou P, Yang XL, Wang XG, Hu B, Zhang L, Zhang W, Si HR, Zhu Y, Li B, Huang CL, Chen HD, Chen J, Luo Y, Guo H, Jiang RD, Liu MQ, Chen Y, Shen XR, Wang X, Zheng XS, Zhao K, Chen QJ, Deng F, Liu LL, Yan B, Zhan FX, Wang YY, Xiao GF, Shi ZL.
Journal Nature
Impact factor24.36
Citation count3984
Date of publishing2020 Mar