Genomes


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Whole Genome Sequences of 54 SARS-CoV-2 Strains (from August to October 2020), reported from Kolkata, West Bengal.
PMID
Title Genomic surveillance and phylodynamic analyses reveal emergence of novel mutation and co-mutation patterns within SARS-CoV2 variants prevalent in India
Author(s) name-
Journal
Impact factor
Citation count
Date of publishing-
Whole Genome Sequence of a SARS-CoV-2 Isolate UF-8 (with an in-frame 12-nucleotide deletion within ORF3a), reported from Florida.
PMID 33632859
Title In-Frame 12-Nucleotide Deletion within Open Reading Frame 3a in a SARS-CoV-2 Strain Isolated from a Patient Hospitalized with COVID-19
Author(s) nameLednicky JA, Cherabuddi K, Tagliamonte MS, Elbadry MA, Subramaniam K, Waltzek TB, Morris JG Jr.
Journal Microbiol Resour Announc
Impact factor0.88
Citation count1
Date of publishing2021 Feb 25
Whole Genome sequences of ten SARS-CoV-2 isolates, reported from Sliema, Malta.
PMID 33509993
Title Genome Sequences of 10 SARS-CoV-2 Viral Strains Obtained by Nanopore Sequencing of Nasopharyngeal Swabs in Malta
Author(s) nameBiazzo M, Madeddu S, Elnifro E, Sultana T, Muscat J, Scerri CA, Santoro F, Pinzauti D.
Journal Microbiol Resour Announc
Impact factor0.88
Citation count1
Date of publishing2021 Jan 28
Whole Genome Sequences of two SARS-CoV-2 isolates, reported from the United States (Arkansas).
PMID 33334896
Title Two SARS-CoV-2 Genome Sequences of Isolates from Rural U.S. Patients Harboring the D614G Mutation, Obtained Using Nanopore Sequencing
Author(s) nameJenjaroenpun P, Wanchai V, Ono-Moore KD, Laudadio J, James LP, Adams SH, Prior F, Nookaew I, Ussery DW, Wongsurawat T.
Journal Microbiol Resour Announc
Impact factor0.88
Citation count1
Date of publishing2020 Dec 17
Whole Genome Sequences of twenty SARS-CoV-2 Isolates, reported from Taiwan.
PMID 32543353
Title SARS-CoV-2 genomic surveillance in Taiwan revealed novel ORF8-deletion mutant and clade possibly associated with infections in Middle East
Author(s) nameGong YN, Tsao KC, Hsiao MJ, Huang CG, Huang PN, Huang PW, Lee KM, Liu YC, Yang SL, Kuo RL, Chen KF, Liu YC, Huang SY, Huang HI, Liu MT, Yang JR, Chiu CH, Yang CT, Chen GW, Shih SR.
Journal Emerg Microbes Infect
Impact factor5.84
Citation count22
Date of publishing2020 Dec
Whole Genome Sequences of two SARS-CoV-2 isolates, reported from Tunis.
PMID 33034798
Title Whole genome sequencing and phylogenetic classification of Tunisian SARS-CoV-2 strains from patients of the Military Hospital in Tunis
Author(s) nameHandrick S, Bestehorn-Willmann M, Eckstein S, Walter MC, Antwerpen MH, Naija H, Stoecker K, Wölfel R, Ben Moussa M.
Journal Virus Genes
Impact factor
Citation count2
Date of publishing2020 Dec
Whole Genome Sequences of two hundred twelve SARS-CoV-2 Isolates, reported from Israel.
PMID 33139704
Title Full genome viral sequences inform patterns of SARS-CoV-2 spread into and within Israel
Author(s) nameMiller D, Martin MA, Harel N, Tirosh O, Kustin T, Meir M, Sorek N, Gefen-Halevi S, Amit S, Vorontsov O, Shaag A, Wolf D, Peretz A, Shemer-Avni Y, Roif-Kaminsky D, Kopelman NM, Huppert A, Koelle K, Stern A.
Journal Nat Commun
Impact factor11.8
Citation count9
Date of publishing2020 Nov 2
Whole Genome Sequences of twenty-three SARS-CoV-2 isolates, reported from the Philippines.
PMID 33093050
Title Coding-Complete Genome Sequences of 23 SARS-CoV-2 Samples from the Philippines
Author(s) nameVelasco JM, Chinnawirotpisan P, Joonlasak K, Manasatienkij W, Huang A, Valderama MT, Diones PC, Leonardia S, Timbol ML, Navarro FC, Villa V 2nd, Tabinas H Jr, Chua D Jr, Fernandez S, Jones A, Klungthong C.
Journal Microbiol Resour Announc
Impact factor0.88
Citation count2
Date of publishing2020 Oct 22
Whole Genome sequences of twenty-nine SARS-CoV-2 isolates, reported from Hangzhou, China.
PMID 33060796
Title Rapid genomic characterization of SARSCoV2 viruses from clinical specimens using nanopore sequencing
Author(s) nameLi J, Wang H, Mao L, Yu H, Yu X, Sun Z, Qian X, Cheng S, Chen S, Chen J, Pan J, Shi J, Wang X.
Journal Sci Rep
Impact factor4.12
Citation count1
Date of publishing2020 Oct 15
Whole Genome Sequence of a SARS-CoV-2 Isolate, reported from Siena.
PMID 32972948
Title Whole-Genome Sequence of SARS-CoV-2 Isolate Siena-1/2020
Author(s) nameCusi MG, Pinzauti D, Gandolfo C, Anichini G, Pozzi G, Santoro F.
Journal Microbiol Resour Announc
Impact factor0.88
Citation count1
Date of publishing2020 Sep 24
Whole Genome Sequences of three SARS-COV-2 isolates, reported from Bangladesh.
PMID 32972934
Title Coding-Complete Genome Sequences of Three SARS-CoV-2 Strains from Bangladesh
Author(s) nameAkter S, Banu TA, Goswami B, Osman E, Uzzaman MS, Habib MA, Jahan I, Mahmud ASM, Sarker MMH, Hossain MS, Shamsuzzaman AKM, Nafisa T, Molla MMA, Yeasmin M, Ghosh AK, Al Din SMS, Ray UC, Sajib SA, Hossain M, Khan MS.
Journal Microbiol Resour Announc
Impact factor0.88
Citation count1
Date of publishing2020 Sep 24
Whole Genome Sequences of SARS-CoV-2 Isolates, reported from Brescia, Italy.
PMID 32967693
Title A persistently replicating SARS-CoV-2 variant derived from an asymptomatic individual
Author(s) nameCaccuri F, Zani A, Messali S, Giovanetti M, Bugatti A, Campisi G, Filippini F, Scaltriti E, Ciccozzi M, Fiorentini S, Caruso A.
Journal J Transl Med
Impact factor4.2
Citation count4
Date of publishing2020 Sep 23
Whole Genome Sequence of a SARS-CoV-2 Isolate, reported from Mexico.
PMID 32556599
Title Full genome sequence of the first SARS-CoV-2 detected in Mexico
Author(s) nameGarcés-Ayala F, Araiza-Rodríguez A, Mendieta-Condado E, Rodríguez-Maldonado AP, Wong-Arámbula C, Landa-Flores M, Del Mazo-López JC, González-Villa M, Escobar-Escamilla N, Fragoso-Fonseca DE, Esteban-Valencia MDC, Lloret-Sánchez L, Arellano-Suarez DS, Nuñez-García TE, Contreras-González NB, Cruz-Ortiz N, Ruiz-López A, Fierro-Valdez MÁ, Regalado-Santiago D, Martínez-Velázquez N, Mederos-Michel M, Vázquez-Pérez J, Martínez-Orozco JA, Becerril-Vargas E, Salas J, Hernández-Rivas L, López-Martínez I, Alomía-Zegarra JL, López-Gatell H, Barrera-Badillo G, Ramírez-González JE.
Journal Arch Virol
Impact factor2.23
Citation count4
Date of publishing2020 Sep
Whole Genome Sequences of six SARS-CoV-2 Isolates, reported from Morocco.
PMID 32763945
Title Genome Sequences of Six SARS-CoV-2 Strains Isolated in Morocco, Obtained Using Oxford Nanopore MinION Technology
Author(s) nameLaamarti M, Chemao-Elfihri MW, Kartti S, Laamarti R, Allam L, Ouadghiri M, Smyej I, Rahoui J, Benrahma H, Diawara I, Alouane T, Essabbar A, Siah S, Karra M, El Hafidi N, El Jaoudi R, Sbabou L, Nejjari C, Amzazi S, Mentag R, Belyamani L, Ibrahimi A.
Journal Microbiol Resour Announc
Impact factor0.88
Citation count1
Date of publishing2020 Aug 6
Whole Genome Sequence of a SARS-CoV-2 Isolate, reported from Bangladesh.
PMID 32646908
Title Coding-Complete Genome Sequence of SARS-CoV-2 Isolate from Bangladesh by Sanger Sequencing
Author(s) nameMoniruzzaman M, Hossain MU, Islam MN, Rahman MH, Ahmed I, Rahman TA, Bhattacharjee A, Amin MR, Rashed A, Keya CA, Das KC, Salimullah M.
Journal Microbiol Resour Announc
Impact factor0.88
Citation count2
Date of publishing2020 Jul 9
Whole Genome Sequences of two SARS-CoV-2 isolates, reported from Israel.
PMID 32646911
Title Coding-Complete Genome Sequences of Two SARS-CoV-2 Isolates from Early Manifestations of COVID-19 in Israel
Author(s) nameCohen-Gihon I, Israeli O, Shifman O, Stein D, Achdout H, Weiss S, Mandelboim M, Erster O, Regev-Yochay G, Segal G, Yitzhaki S, Shapira SC, Beth-Din A, Zvi A.
Journal Microbiol Resour Announc
Impact factor0.88
Citation count1
Date of publishing2020 Jul 9
Whole Genome Sequences of five SARS-CoV-2 Isolates, reported from Bangladesh.
PMID 32732236
Title Reports of Coding-Complete Genome Sequences of Five 2019 Novel Coronavirus (SARS-CoV-2) Strains Isolated in Bangladesh
Author(s) nameKhan MI, Hasan KN, Sufian A, Hosen MB, Polol MNI, Khaleque MA, Rahman MM, Chowdhury MSM, Haider HU, Razu MH, Khan M, Rabbi MF.
Journal Microbiol Resour Announc
Impact factor0.88
Citation count1
Date of publishing2020 Jul 30
Whole Genome Sequences of three SARS-CoV-2 Isolates, reported from Hong Kong.
PMID 32732237
Title Genome Sequences of SARS-CoV-2 Strains Detected in Hong Kong
Author(s) nameAu CH, Chan WS, Lam HY, Ho DN, Lam SYM, Zee JST, Chan TL, Ma ESK.
Journal Microbiol Resour Announc
Impact factor0.88
Citation count1
Date of publishing2020 Jul 30
Whole Genome Sequence of a SARS-CoV-2 Isolate, reported from Morocco.
PMID 32616647
Title Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Causing a COVID-19 Case in Morocco
Author(s) nameLemriss S, Souiri A, Amar N, Lemzaoui N, Mestoui O, Labioui M, Ouaariba N, Jibjibe A, Yartaoui M, Chahmi M, El Rhouila M, Sellak S, Kandoussi N, El Kabbaj S.
Journal Microbiol Resour Announc
Impact factor0.88
Citation count1
Date of publishing2020 Jul 2
Whole Genome Sequence of a SARS-CoV-2 Isolates, reported from Hamburg, northern Germany.
PMID 32499358
Title Complete Genome Sequence of a SARS-CoV-2 Strain Isolated in Northern Germany
Author(s) namePfefferle S, Huang J, Nörz D, Indenbirken D, Lütgehetmann M, Oestereich L, Günther T, Grundhoff A, Aepfelbacher M, Fischer N.
Journal Microbiol Resour Announc
Impact factor0.88
Citation count5
Date of publishing2020 Jun 4
Whole Genome Sequence of a SARS-CoV-2 Isolate reported from Colombia.
PMID 32586872
Title Genome Sequence of SARS-CoV-2 Isolate Cali-01, from Colombia, Obtained Using Oxford Nanopore MinION Sequencing
Author(s) nameLopez-Alvarez D, Parra B, Cuellar WJ.
Journal Microbiol Resour Announc
Impact factor0.88
Citation count3
Date of publishing2020 Jun 25
Whole Genome Sequences of four SARS-CoV-2 Isolates, reported from Ecuador.
PMID 32588004
Title Genome sequencing of the first SARS-CoV-2 reported from patients with COVID-19 in Ecuador
Author(s) nameMarquez S, Prado-Vivar B, Guadalupe JJ, Gutierrez Granja B, Jibaja M, Tobar M, Mora F, Gaviria J, Garcia M, Ligna E, Espinosa F, Reyes J, Barragan V, Rojas-Silva P, Trueba G, Grunauer M, Cardenas P.
Journal medRxiv
Impact factorCant find
Citation count1
Date of publishing2020 Jun 14
Whole Genome Sequence of a SARS-CoV-2 Isolate, reported from Bangladesh.
PMID 32527780
Title Complete Genome Sequence of a Novel Coronavirus (SARS-CoV-2) Isolate from Bangladesh
Author(s) nameSaha S, Malaker R, Sajib MSI, Hasanuzzaman M, Rahman H, Ahmed ZB, Islam MS, Islam M, Hooda Y, Ahyong V, Vanaerschot M, Batson J, Hao S, Kamm J, Kistler A, Tato CM, DeRisi JL, Saha SK.
Journal Microbiol Resour Announc
Impact factor0.88
Citation count4
Date of publishing2020 Jun 11
Whole Genome Sequence of a SARS-CoV-2 Isolate, reported from Peru.
PMID 32381617
Title Near-Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Causing a COVID-19 Case in Peru
Author(s) namePadilla-Rojas C, Lope-Pari P, Vega-Chozo K, Balbuena-Torres J, Caceres-Rey O, Bailon-Calderon H, Huaringa-Nuñez M, Rojas-Serrano N.
Journal Microbiol Resour Announc
Impact factor0.88
Citation count4
Date of publishing2020 May 7
Whole Genome Sequences of two SARS-CoV-2 Isolates, reported from Egypt.
PMID 32467284
Title Coding-Complete Genome Sequences of Two SARS-CoV-2 Isolates from Egypt
Author(s) nameKandeil A, Mostafa A, El-Shesheny R, Shehata M, Roshdy WH, Ahmed SS, Gomaa M, Taweel AE, Kayed AE, Mahmoud SH, Moatasim Y, Kutkat O, Kamel MN, Mahrous N, Sayes ME, Guindy NME, Naguib A, Ali MA.
Journal Microbiol Resour Announc
Impact factor0.88
Citation count4
Date of publishing2020 May 28